Basic Information
VIS ID
TVIS30002161
Fusion event
HIV-chr13 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr13
Cytoband
q14.3
Reference genome
GRCh37/hg19
Start
53452990/52878855 (Hg38)
End
53452990/52878855 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-15a/Upstream/68715; hsa-mir-1267/Downstream/1433117;
Nearest TSS
ENST00000623511/Upstream/30214; ENST00000219022/Downstream/149904;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/26995, chr13-CpG: 217/Downstream/321274
Nearby gene
PCDH8(No orient, 30215)
Nearest cancer related gene
PCDH8(TSG, No orient, 30215)
Upstream sequence
CCTTCAGAGGTGTCATTAAGTGCAGATGTATTTGATTATCTGCTTGAAGGTGGGAGTCATACAGAACATGCTGAACCAACACTGTGGCATCCATGCTGTT
Downstream sequence
CACTTATCCAACTCCGTATTTAGTGCTGGCTGCTTATATTAGCTGACGAAGCCCTGTGTGGTCTGGGTCCAGAATATAGTAGACAGCTTTGATCAGACTC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate