Basic Information
VIS ID
TVIS30002167
Fusion event
HIV-RBM26 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr13
Cytoband
q31.1
Reference genome
GRCh37/hg19
Start
79965001/79390866 (Hg38)
End
79965001/79390866 (Hg38)
Orient
+
Location type
Intronic
Target gene
RBM26
miRNAs that regulate target gene
hsa-mir-34a-5p ; hsa-mir-324-3p ; hsa-mir-374a-5p ; hsa-mir-129-5p ; hsa-mir-130b-5p ; hsa-mir-3119 ; hsa-mir-3140-3p ; hsa-mir-4317 ; hsa-mir-4753-3p ; hsa-mir-4768-5p ; hsa-mir-616-3p ; hsa-mir-627-3p ; hsa-mir-6809-3p ; hsa-mir-6833-3p
Nearest miRNA
hsa-mir-1297/Upstream/1692750; hsa-mir-1267/Downstream/8227799;
Nearest TSS
ENST00000623511/Upstream/24156; ENST00000607864/Downstream/14922;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/731584, chr13-CpG: 65/Downstream/15003
Upstream sequence
ttttctgtatattcaaaattttcaaaataaagttgtagggcaaGGGCAGTCAAGGAAAACCAGGCAGGAAAATTCTAAAAATGAACATTATTGACAGAGG
Downstream sequence
ACTAGCCTTTCATCACCAAAAATAAGAGAATAGTGTAAAAGATATAGATCAATATATAAAAAGTCTAGAATAAACCCAAATACACATAAGAACTTAGTAT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate