Basic Information
VIS ID
TVIS30002168
Fusion event
HIV-chr13 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr13
Cytoband
q31.1
Reference genome
GRCh37/hg19
Start
81832147/81258012 (Hg38)
End
81832147/81258012 (Hg38)
Orient
+
Nearest miRNA
hsa-mir-1297/Upstream/3559896; hsa-mir-1267/Downstream/6360653;
Nearest TSS
ENST00000623511/Upstream/7574; ENST00000446314/Downstream/2624381;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/602702, chr13-CpG: 18/Downstream/2621517
Nearby gene
RNU6-77P(+7735) ;
Upstream sequence
AAATTCAAATTTAATGTAGTCTCTCCCTGAGATGGTGGGAGGAAAATCCTCAGAAATGTGGTATGATGACTTTTTAAACTTGGATTTCAAGGGTAAGTGC
Downstream sequence
ATATACCATCTGTTTTCAAATATTTTATAAACTATACATAACTTAGCACTTGGTCACAAACTCTCTACGAAGAAATGTTTCCATTCGTTATATCAACATT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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