Basic Information
VIS ID
TVIS30002172
Fusion event
HIV-DOCK9 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr13
Cytoband
q32.3
Reference genome
End
99578108/98925854 (Hg38)
Orient
-
Location type
Exonic
Fragile sites / regions
Target gene
Nearest miRNA
hsa-mir-1297/Upstream/717254; hsa-mir-1267/Downstream/430277;
Upstream sequence
ATTGCATATGAAGTTACATACCTCCCCCCAAGCATTTCAAGTACAAAGACTTTTCCCTATGTGTATAATATAGCTTACTCACTTCGGAAGCTGTCGAAAC
Downstream sequence
TCTCCTGAGTAATCTTCATATTTATAGTTCACAAGATGCCAGTCAGAGTTATAGGTTTTGATGCACTATTGAAGGGGGATTTTAAAAATAGAAAATAAAA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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