Basic Information
VIS ID
TVIS30002181
Fusion event
HIV-RASA3 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr13
Cytoband
q34
Reference genome
GRCh37/hg19
Start
114819698/114054223 (Hg38)
End
114819698/114054223 (Hg38)
Orient
-
Location type
Intronic
Target gene
RASA3
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-mir-92a-3p
Nearest miRNA
hsa-mir-1267/Upstream/791224; hsa-mir-4502/Downstream/190282;
Nearest TSS
ENST00000623511/Upstream/18030; ENST00000643687/Downstream/78388;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/5242, chr13-CpG: 54/Downstream/16368
Upstream sequence
ctcaaaaaaataataaaaattaaaaaaataaaaagtgaaaagacagactagaaaaaatattagtaagtcagttatctgataaaagacttatatacagaat
Downstream sequence
atataaagaactcttatgactcaataaatgatgacaaataattcagtttaaaaaggggcaaaagatttgaacacacatatcaccaaagacaaatggccaa
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate