Proximate region of VIS (GRCh38)VISEnhancerEnhancer/PromoterPromoterGene114379057114154691114223084114234887114272723114262394114266454114259619114262007114234401114236406114229405114231282114225958114227201114222146114223375114246202114247353114250915114251973114237346114238376114256828114257851114249146114249295114266874
Basic Information
VIS ID
TVIS30002187
Fusion event
HIV-CDC16 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr13
Cytoband
q34
Reference genome
GRCh37/hg19
Start
115032349/114266874 (Hg38)
End
115032349/114266874 (Hg38)
Orient
-
Location type
Intronic
Target gene
CDC16
miRNAs that regulate target gene
hsa-mir-93-5p
Nearest miRNA
hsa-mir-1267/Upstream/22313; hsa-mir-4502/Downstream/6954;
Nearest TSS
ENST00000623511/Upstream/2662; ENST00000492270/Downstream/14710;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/31475, chr13-CpG: 135/Downstream/14405
Upstream sequence
gctccccctcaccggggttcatgccattctcctgcctcagcctcctgagtagctgggactacaggcacccatcaccacgcccggctaatttttttgtatt
Downstream sequence
tttagtagtgatggggtttcacagtgttcgccaggatgatcttgatctcctgaccttgtgatccgccctcctcggcctcccaaagtgctgggattacagg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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