Basic Information
VIS ID
TVIS30002196
Fusion event
HIV-TRA integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr14
Cytoband
q11.2
Reference genome
GRCh37/hg19
Start
22993543/22524572 (Hg38)
End
22993543/22524572 (Hg38)
Orient
-
Location type
Intronic
Target gene
TRA
Nearest miRNA
hsa-mir-6717/Upstream/1501186; hsa-mir-1185-1/Downstream/432378;
Nearest TSS
ENST00000550708/Upstream/247; ENST00000390518/Downstream/691;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/1013015, chr14-CpG: 40/Downstream/64443
Nearby gene
DAD1(No orient, 40264)
Upstream sequence
TAAATTCTAAGAGCTTTCCCAGTTTGTGTTAGAACCATAATTTTTCTACCTCACACGTCTCCCTCGCCTTCTCTGTCACCTCAGAACAGCTCCTCCTAAG
Downstream sequence
GCATGACTTCACAATGGTACATTTGTTGGTGGCGCAGTCTTTGTGGTCAGATAAAAACTGAGCTAATTATCTGAAATTATCTCAGGTCTCTAAGTGAGAG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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