Basic Information
VIS ID
TVIS30002206
Fusion event
HIV-LOC728755 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr14
Cytoband
q12
Reference genome
GRCh37/hg19
Start
27835518/27366312 (Hg38)
End
27835518/27366312 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC728755
Nearest miRNA
hsa-mir-208a/Upstream/457587; hsa-mir-1185-1/Downstream/266893;
Nearest TSS
ENST00000550708/Upstream/493149; ENST00000555350/Downstream/246276;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/1161040, chr14-CpG: 203/Downstream/1399371
Nearby gene
LINC00645(No orient, 246276)
Upstream sequence
cctgccatttgccacaacatggattaacctggaggatactgtgttaaacaaaataagccagtcacagaaaggcaaatactgcatgatctcacataagtga
Downstream sequence
gatcataaaaaagttgaactcattgagacagagagtatttgtgtttgccagggactacaagatgaggaaaatggaagagagatgttgttcaaggggtaca
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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