Basic Information
VIS ID
TVIS30002207
Fusion event
HIV-LOC107984685 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr14
Cytoband
q12
Reference genome
GRCh37/hg19
Start
29638620/29169414 (Hg38)
End
29638620/29169414 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC107984685
Nearest miRNA
hsa-mir-208a/Upstream/1536136; hsa-mir-1185-1/Downstream/1845232;
Nearest TSS
ENST00000550708/Upstream/190490; ENST00000549515/Downstream/220932;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/383551, chr14-CpG: 147/Downstream/757590
Nearby gene
MIR548AI(No orient, 257497)
Upstream sequence
aacccagacctcagggctctttaagccaggactgtgacatgctgtaacaacctctttgaggctctgcagtttctgggatctccaagatttcgggcgccac
Downstream sequence
tgcattccccttgtccagatgttggtgcccacagcagaagtcacctgcagtacatctggtacagctgcagccttgcatggagttggcacctgtgccagca
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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