Basic Information
VIS ID
TVIS30002209
Fusion event
HIV-chr14 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr14
Cytoband
q21.2
Reference genome
GRCh37/hg19
Start
45048036/44578833 (Hg38)
End
45048036/44578833 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-208a/Upstream/7626442; hsa-mir-1185-1/Downstream/3182162;
Nearest TSS
ENST00000550708/Upstream/69830; ENST00000553841/Downstream/203996;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/2971707, chr14-CpG: 22/Downstream/308636
Nearby gene
FSCB(No orient, 71537)
Upstream sequence
gctccagtgctctgtgtctccaagtaaatttgaaaggcagtctaggccataaggattgcaactcttaggcaaatcctagtgctaaactaggctgagacag
Downstream sequence
tggactggaagggcatgcgatatactgagacaccaactggggcagccaagggagtgctgctatcagctcttccctagccccaggctgcacagctcccagc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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