Basic Information
VIS ID
TVIS30002216
Fusion event
HIV-chr14 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr14
Cytoband
q22.3
Reference genome
GRCh37/hg19
Start
55880139/55413421 (Hg38)
End
55880139/55413421 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-208a/Upstream/535228; hsa-mir-1185-1/Downstream/4233541;
Nearest TSS
ENST00000550708/Upstream/1563; ENST00000557267/Downstream/27195;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/1458, chr14-CpG: 24/Downstream/27058
Nearby gene
TBPL2(No orient, 791)
Upstream sequence
TCCTATCGTGCTAGATGATATCACAGATAGTATCTAGCTTATGCAGTTATTTGAAACTCCTATATGTTGCTATATATTTTCAGAGAACGCATATTAATGT
Downstream sequence
ATTACTTAACAGCAGAGCACTGAGGTTTTTGGATACAAAATGTAGTTTAAATATTTCTTTAAGGGGAGGGGGCGGCGCCACACTTCTCAATGAAGAGAAA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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