VISDB Viral Integration Site DataBase

VIS ID

TVIS30002225

Fusion event

HIV-PPP2R5E integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr14

Cytoband

q23.2

Reference genome

Start

End

63965556/63498838 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-19b-3p ; hsa-mir-365a-3p ; hsa-mir-125a-5p ; hsa-let-7c-5p ; hsa-let-7b-5p ; hsa-mir-23a-3p ; hsa-mir-218-5p ; hsa-mir-4701-3p ; hsa-mir-6736-5p ; hsa-mir-1262 ; hsa-mir-4452 ; hsa-mir-1273e ; hsa-mir-6794-3p ; hsa-mir-1273f ; hsa-mir-4708-5p ; hsa-mir-6088 ; hsa-mir-4770 ; hsa-mir-143-3p ; hsa-mir-520h ; hsa-mir-520g-3p ; hsa-mir-3973 ; hsa-mir-4712-3p ; hsa-mir-548l ; hsa-mir-548aw ; hsa-mir-525-5p ; hsa-mir-520a-5p ; hsa-mir-582-5p ; hsa-mir-101-3p ; hsa-mir-466 ; hsa-mir-4672 ; hsa-mir-3941 ; hsa-mir-3138 ; hsa-mir-6894-5p ; hsa-mir-1468-3p ; hsa-mir-548x-5p ; hsa-mir-548g-5p ; hsa-mir-548f-5p ; hsa-mir-548aj-5p ; hsa-mir-3605-5p ; hsa-mir-3664-3p ; hsa-mir-873-5p ; hsa-mir-6847-5p ; hsa-mir-4272 ; hsa-mir-6504-3p ; hsa-mir-5586-5p ; hsa-mir-101-5p ; hsa-mir-1265 ; hsa-mir-576-3p ; hsa-mir-510-5p ; hsa-mir-4801 ; hsa-mir-4731-3p ; hsa-mir-181a-5p ; hsa-mir-181c-5p ; hsa-mir-181d-5p ; hsa-mir-4262 ; hsa-mir-181b-5p ; hsa-mir-19a-3p ; hsa-mir-1277-5p ; hsa-mir-5011-5p ; hsa-mir-190a-3p ; hsa-mir-3163 ; hsa-mir-410-3p ; hsa-mir-4662a-3p ; hsa-mir-548x-3p ; hsa-mir-548j-3p ; hsa-mir-548aq-3p ; hsa-mir-548am-3p ; hsa-mir-548aj-3p ; hsa-mir-548ah-3p ; hsa-mir-548ae-3p ; hsa-mir-510-3p ; hsa-mir-2355-5p

Nearest miRNA

hsa-mir-208a/Upstream/2850127; hsa-mir-1185-1/Downstream/596186;

Nearest TSS

Nearest CpG islands

None/Target, chr14-CpG: 35/Upstream/452560, chr14-CpG: 103/Downstream/43989

Upstream sequence

TAGTCACAAATCCCTATATACATCTGAAAACACCAGTACAAAtcagtctgcagataggggttcatttggataatcaaatcccttataacaacttcatata

Downstream sequence

cctctccagcattcgtggcccaaaattagaaaccactgGCAGAGACTATGAAATATAAAACTGCCTAGTTACAAGCAGAATGGCTCTTTAAAGTAAATAT