VISDB Viral Integration Site DataBase

VIS ID

TVIS30002235

Fusion event

HIV-ZFP36L1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr14

Cytoband

q24.1

Reference genome

Start

End

69254467/68787750 (Hg38)

Orient

+

Location type

UTR3

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-98-5p ; hsa-let-7a-5p ; hsa-mir-423-5p ; hsa-mir-656-3p ; hsa-mir-1277-5p ; hsa-mir-6734-3p ; hsa-mir-548a-3p ; hsa-mir-548e-3p ; hsa-mir-548f-3p ; hsa-mir-548ar-3p ; hsa-mir-5582-3p ; hsa-mir-548az-3p ; hsa-mir-181a-5p ; hsa-mir-181b-5p ; hsa-mir-181c-5p ; hsa-mir-181d-5p ; hsa-mir-4504 ; hsa-mir-30a-3p ; hsa-mir-30d-3p ; hsa-mir-30e-3p ; hsa-mir-624-3p ; hsa-mir-8061 ; hsa-mir-4760-5p ; hsa-mir-4709-3p ; hsa-mir-376a-5p ; hsa-mir-5190 ; hsa-mir-7852-3p ; hsa-mir-548at-5p ; hsa-mir-27b-3p ; hsa-mir-27a-3p ; hsa-mir-216a-3p ; hsa-mir-128-3p ; hsa-mir-3681-3p ; hsa-mir-498 ; hsa-mir-193b-5p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-3185 ; hsa-mir-6837-5p ; hsa-mir-4685-5p ; hsa-mir-7113-5p ; hsa-mir-4441 ; hsa-mir-6754-5p ; hsa-mir-4270 ; hsa-mir-6732-5p ; hsa-mir-4756-5p ; hsa-mir-4739 ; hsa-mir-1321 ; hsa-mir-5692c ; hsa-mir-5692b ; hsa-mir-6507-5p ; hsa-mir-548g-3p ; hsa-mir-6083 ; hsa-mir-3944-5p ; hsa-mir-6499-3p ; hsa-mir-208b-5p ; hsa-mir-208a-5p ; hsa-mir-100-3p ; hsa-mir-3977 ; hsa-mir-103a-2-5p ; hsa-mir-382-5p ; hsa-mir-495-5p ; hsa-mir-124-3p ; hsa-mir-3148 ; hsa-mir-4720-3p ; hsa-mir-3910 ; hsa-mir-548an ; hsa-mir-335-3p ; hsa-mir-3074-5p ; hsa-mir-6868-3p ; hsa-mir-3157-5p ; hsa-mir-5581-5p ; hsa-mir-4297 ; hsa-mir-3667-3p ; hsa-mir-3614-3p ; hsa-mir-1271-5p ; hsa-mir-182-5p ; hsa-mir-183-5p ; hsa-mir-30a-5p ; hsa-mir-30b-5p ; hsa-mir-30c-5p ; hsa-mir-30d-5p ; hsa-mir-30e-5p ; hsa-mir-3140-3p ; hsa-mir-3182 ; hsa-mir-3607-3p ; hsa-mir-3686 ; hsa-mir-4753-3p ; hsa-mir-4768-5p ; hsa-mir-506-3p ; hsa-mir-548av-3p ; hsa-mir-581 ; hsa-mir-6809-3p ; hsa-mir-6832-3p ; hsa-mir-6833-3p ; hsa-mir-8070 ; hsa-mir-96-5p

Nearest miRNA

hsa-mir-208a/Upstream/1345820; hsa-mir-1185-1/Downstream/3729070;

Nearest TSS

Nearest CpG islands

None/Target, chr14-CpG: 35/Upstream/159060, chr14-CpG: 34/Downstream/2209

Upstream sequence

CACCATCAATGTTTCTTGAAAAAACGGGGTTTATTGATTTTTAAACTGCAAATAGTCGTTACAAAAAGTTTTTTTTTCTTTTAAATAAATTCACACAAAG

Downstream sequence

AAAGAGAAATAGAAAGCGACGGTAGTGACCAGCAAGAGGAATAATAATTACATTCATCTTAATGTGTGTGTGCCAGTTCTGTTTACATTAACATTGGAAA