VISDB Viral Integration Site DataBase

VIS ID

TVIS30002243

Fusion event

HIV-RGS6 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr14

Cytoband

q24.2

Reference genome

Start

End

72487155/72020438 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-6763-5p ; hsa-mir-3150a-3p ; hsa-mir-6727-5p ; hsa-mir-185-3p ; hsa-mir-6825-5p ; hsa-mir-939-5p ; hsa-mir-1343-5p ; hsa-mir-3175 ; hsa-mir-762 ; hsa-mir-4498 ; hsa-mir-5001-5p ; hsa-mir-4492 ; hsa-mir-8085 ; hsa-mir-6731-5p ; hsa-mir-5787 ; hsa-mir-4505 ; hsa-mir-4731-5p ; hsa-mir-4480 ; hsa-mir-8089 ; hsa-mir-4700-5p ; hsa-mir-4667-5p ; hsa-mir-6775-5p ; hsa-mir-4508 ; hsa-mir-5090 ; hsa-mir-3691-3p ; hsa-mir-6838-3p ; hsa-mir-6895-5p ; hsa-mir-5571-3p ; hsa-mir-3162-5p ; hsa-mir-7106-5p ; hsa-mir-1289 ; hsa-mir-765 ; hsa-mir-135a-3p ; hsa-mir-4756-5p ; hsa-mir-4739 ; hsa-mir-1321 ; hsa-mir-6760-5p ; hsa-mir-4747-3p ; hsa-mir-4446-5p ; hsa-mir-5006-3p ; hsa-mir-4755-5p ; hsa-mir-642a-5p ; hsa-mir-5196-5p ; hsa-mir-4747-5p ; hsa-mir-938 ; hsa-mir-1233-3p ; hsa-mir-3182 ; hsa-mir-6506-5p ; hsa-mir-619-5p ; hsa-mir-3192-5p ; hsa-mir-4646-5p ; hsa-mir-204-3p ; hsa-mir-877-3p ; hsa-mir-2276-5p ; hsa-mir-6892-3p ; hsa-mir-501-5p ; hsa-mir-129-2-3p ; hsa-mir-129-1-3p ; hsa-mir-500a-5p ; hsa-mir-629-3p ; hsa-mir-874-3p ; hsa-mir-3157-3p ; hsa-mir-4279 ; hsa-mir-6794-3p ; hsa-mir-513a-5p ; hsa-mir-4290 ; hsa-mir-130b-5p ; hsa-mir-205-5p ; hsa-mir-4639-3p ; hsa-mir-27a-3p ; hsa-mir-27b-3p ; hsa-mir-128-3p ; hsa-mir-216a-3p ; hsa-mir-3681-3p

Nearest miRNA

hsa-mir-208a/Upstream/4578508; hsa-mir-1185-1/Downstream/496382;

Nearest TSS

Nearest CpG islands

None/Target, chr14-CpG: 35/Upstream/87601, chr14-CpG: 165/Downstream/871643

Upstream sequence

TCTTTTCTGTGTTCAGAAAATACCCATTCTTTGTTTCTCACAACTGTTAACCTGTCCTAGGATGAACTGGTTCTGCCTCCCTTTGCTGTTTCCTGCATTA

Downstream sequence

GTACTTGGAAAAGCCTGTGGCTGCATGGTCTGAGGTGTGACCTTCATGGTGGGCACACCTTGTCTCTCTTCTCTGCCCGAAAGGAGGCCACTGTTTTCTT