Basic Information
VIS ID
TVIS30002247
Fusion event
HIV-ZNF410 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr14
Cytoband
q24.3
Reference genome
GRCh37/hg19
Start
74368439/73901736 (Hg38)
End
74368439/73901736 (Hg38)
Orient
+
Location type
Intronic
Target gene
ZNF410
miRNAs that regulate target gene
hsa-mir-124-3p ; hsa-mir-26a-5p ; hsa-mir-26b-5p ; hsa-mir-32-3p ; hsa-mir-129-5p ; hsa-mir-1297 ; hsa-mir-3175 ; hsa-mir-4465 ; hsa-mir-4690-3p ; hsa-mir-5685 ; hsa-mir-5693 ; hsa-mir-7156-3p ; hsa-mir-5007-5p ; hsa-mir-3680-3p ; hsa-mir-557 ; hsa-mir-507 ; hsa-mir-450b-5p ; hsa-mir-6516-5p ; hsa-mir-5047 ; hsa-mir-1301-3p ; hsa-mir-6508-3p ; hsa-mir-4726-5p ; hsa-mir-4640-5p ; hsa-mir-550b-3p ; hsa-mir-510-5p ; hsa-mir-512-5p
Nearest miRNA
hsa-mir-208a/Upstream/142917; hsa-mir-1185-1/Downstream/578397;
Nearest TSS
ENST00000550708/Upstream/8447; ENST00000554316/Downstream/470;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/14608, chr14-CpG: 47/Downstream/48418
Upstream sequence
GCATGATTTTTTTggccggtgcagtggctcatgcctgtaatcccagcactttgggtggccgaggcgggtggatctgttgagctcaggagaccagcctggg
Downstream sequence
caacatggcaaaaccccatctctacaaaaaaaaaatagaaaaaattagccaggtgtggtagtgcacacctgtctctagtcccagctacttgggaggctga
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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