Basic Information
VIS ID
TVIS30002248
Fusion event
HIV-YLPM1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr14
Cytoband
q24.3
Reference genome
GRCh37/hg19
Start
75241438/74774735 (Hg38)
End
75241438/74774735 (Hg38)
Orient
+
Location type
Intronic
Target gene
YLPM1
miRNAs that regulate target gene
hsa-mir-222-3p ; hsa-let-7b-5p
Nearest miRNA
hsa-mir-208a/Upstream/294531; hsa-mir-1185-1/Downstream/2491483;
Nearest TSS
ENST00000550708/Upstream/11369; ENST00000547879/Downstream/6650;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/11083, chr14-CpG: 58/Downstream/107047
Upstream sequence
gacctcatgatctacctgcctcggcctcccagagtgctgggattacaggcgtgagccactgcgctccgcctttttttttttgtatttttgtagagacggg
Downstream sequence
gtttcaccatgttggccaggctggtcttgaactcctgaccttaggtgatcagcccaccttggcctcccaaagtgctgggattacaggtgtgagccactgc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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