Basic Information
VIS ID
TVIS30002250
Fusion event
HIV-BATF integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr14
Cytoband
q24.3
Reference genome
GRCh37/hg19
Start
75996204/75529861 (Hg38)
End
75996204/75529861 (Hg38)
Orient
+
Location type
Intronic
Target gene
BATF
miRNAs that regulate target gene
hsa-mir-26b-5p
Nearest miRNA
hsa-mir-208a/Upstream/1049657; hsa-mir-1185-1/Downstream/1736357;
Nearest TSS
ENST00000550708/Upstream/7301; ENST00000555058/Downstream/48756;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/101215, chr14-CpG: 28/Downstream/16626
Upstream sequence
cccaaaagaaaaatgaacaatgggccgggcgcggcggctcacgccttaatcccagcaatttgggaggccgaggcgggcggatcacgaggtcagcagatcg
Downstream sequence
agaccatcctggctaacacagtgaaaccccgtctctactaaaaatacaaaaaattagccaggcgtggtggcgggtgcctgtagtcccagctacttgagag
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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