VISDB Viral Integration Site DataBase

VIS ID

TVIS30002251

Fusion event

HIV-SPTLC2 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr14

Cytoband

q24.3

Reference genome

Start

End

78033008/77566665 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-3187-3p ; hsa-mir-4435 ; hsa-mir-588 ; hsa-mir-4701-5p ; hsa-mir-548s ; hsa-mir-6788-3p ; hsa-mir-6832-5p ; hsa-mir-6086 ; hsa-mir-377-5p ; hsa-mir-655-5p ; hsa-mir-6088 ; hsa-mir-4770 ; hsa-mir-143-3p ; hsa-mir-4716-5p ; hsa-mir-4494 ; hsa-mir-4781-3p ; hsa-mir-4639-5p ; hsa-mir-5581-3p ; hsa-mir-340-5p ; hsa-mir-210-5p ; hsa-mir-4749-3p ; hsa-mir-6810-3p ; hsa-mir-6801-3p ; hsa-mir-6872-3p ; hsa-mir-330-3p ; hsa-mir-5590-3p ; hsa-mir-142-5p ; hsa-mir-548p ; hsa-mir-93-5p ; hsa-mir-526b-3p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-20a-5p ; hsa-mir-17-5p ; hsa-mir-106b-5p ; hsa-mir-106a-5p ; hsa-mir-6507-3p ; hsa-mir-887-5p ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-6788-5p ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-6505-5p ; hsa-mir-466 ; hsa-mir-4672 ; hsa-mir-3941 ; hsa-mir-8085 ; hsa-mir-6731-5p ; hsa-mir-6878-5p ; hsa-mir-3189-3p ; hsa-mir-4801 ; hsa-mir-4731-3p ; hsa-mir-548ao-3p ; hsa-mir-3667-5p ; hsa-mir-4694-3p ; hsa-mir-129-5p ; hsa-mir-8055 ; hsa-mir-6864-3p ; hsa-mir-3672 ; hsa-mir-6867-3p ; hsa-mir-642a-5p ; hsa-mir-4524a-3p ; hsa-mir-4685-3p ; hsa-mir-4287 ; hsa-mir-7113-3p ; hsa-mir-4469 ; hsa-mir-2276-5p ; hsa-mir-6892-3p ; hsa-mir-1228-3p ; hsa-mir-5007-5p ; hsa-mir-4797-5p ; hsa-mir-215-3p ; hsa-mir-5586-3p ; hsa-mir-5693 ; hsa-mir-6499-3p ; hsa-mir-6773-3p ; hsa-mir-891a-3p ; hsa-mir-1200 ; hsa-mir-183-3p ; hsa-mir-3663-5p ; hsa-mir-378a-5p ; hsa-mir-4452 ; hsa-mir-4635 ; hsa-mir-4755-3p ; hsa-mir-6131 ; hsa-mir-6513-3p ; hsa-mir-6790-3p ; hsa-mir-6807-5p ; hsa-mir-6821-3p

Nearest miRNA

hsa-mir-1260a/Upstream/300375; hsa-mir-1185-1/Downstream/16381561;

Nearest TSS

Nearest CpG islands

None/Target, chr14-CpG: 35/Upstream/67338, chr14-CpG: 58/Downstream/49576

Upstream sequence

cgccattctcctgcctcagcctcccgagtagctgggaccacaggcgcctgccactacgcctaatttttatatttttagtagagacggggtttcaccgtgt

Downstream sequence

tagccaggatggtctcgatctcctgacctcgtgttccacccgcctcggcctcccaaagtcctgggattacaggcgtgagccaccgcgcccggccacaaaa