VISDB Viral Integration Site DataBase

VIS ID

TVIS30002255

Fusion event

HIV-GTF2A1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr14

Cytoband

q31.1

Reference genome

Start

End

81673341/81206997 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-96-5p ; hsa-mir-21-5p ; hsa-mir-424-5p ; hsa-mir-3658 ; hsa-mir-4465 ; hsa-mir-26b-5p ; hsa-mir-26a-5p ; hsa-mir-1297 ; hsa-mir-3653-3p ; hsa-mir-95-5p ; hsa-mir-5697 ; hsa-mir-338-5p ; hsa-mir-6507-5p ; hsa-mir-4422 ; hsa-mir-548e-5p ; hsa-mir-4776-3p ; hsa-mir-192-3p ; hsa-mir-4480 ; hsa-mir-4662a-5p ; hsa-mir-5589-3p ; hsa-mir-517-5p ; hsa-mir-6508-5p ; hsa-mir-8067 ; hsa-mir-92b-3p ; hsa-mir-92a-3p ; hsa-mir-367-3p ; hsa-mir-363-3p ; hsa-mir-32-5p ; hsa-mir-25-3p ; hsa-mir-5680 ; hsa-mir-5684 ; hsa-mir-302f ; hsa-mir-1276 ; hsa-mir-4311 ; hsa-mir-299-3p ; hsa-mir-4657 ; hsa-mir-4491 ; hsa-mir-583 ; hsa-mir-106a-3p ; hsa-mir-5002-5p ; hsa-mir-5011-5p ; hsa-mir-410-3p ; hsa-mir-5692c ; hsa-mir-5692b ; hsa-mir-1197 ; hsa-mir-1277-5p ; hsa-mir-8080 ; hsa-mir-5692a ; hsa-mir-659-3p ; hsa-mir-4642 ; hsa-mir-6715b-3p ; hsa-mir-92a-1-5p ; hsa-mir-3189-5p ; hsa-mir-4758-3p ; hsa-mir-5699-5p ; hsa-mir-4460 ; hsa-mir-4727-3p ; hsa-mir-663b ; hsa-mir-3677-5p ; hsa-mir-6856-5p ; hsa-mir-6758-5p

Nearest miRNA

hsa-mir-1260a/Upstream/3940707; hsa-mir-1185-1/Downstream/12741229;

Nearest TSS

Nearest CpG islands

None/Target, chr14-CpG: 35/Upstream/251780, chr14-CpG: 147/Downstream/13044

Upstream sequence

TACTACACTGAGAAAAAACTTTTGCAGATTTTTGTTATACACACATACACTGGCGCATGTATTTATTCAAAATGTTAAATACTATTAATTCTTAAGGAGG

Downstream sequence

GTCCTAGTCAAGAAGTTTGAGAAACACTGTTCTACACTGTTATCAAGGCGaatttttttaaatttataaatatGATATCCTCTGCTTAAAAACTGGAACC