Basic Information
VIS ID
TVIS30002256
Fusion event
HIV-LOC105370613 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr14
Cytoband
q31.3
Reference genome
GRCh37/hg19
Start
88624702/88158358 (Hg38)
End
88624702/88158358 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105370613
Nearest miRNA
hsa-mir-1260a/Upstream/10892068; hsa-mir-1185-1/Downstream/5789868;
Nearest TSS
ENST00000550708/Upstream/113630; ENST00000553487/Downstream/1487;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/165013, chr14-CpG: 106/Downstream/164846
Nearby gene
KCNK10(No orient, 21750)
Upstream sequence
TTATAGGATATTCTTTTTATTGTCCAAAATTAGCATAGCCAGAAACAAAATCTTGGACCTGCCTAGCTGGGCAAGAATCTAATAATGAAGGTAGAGGGAA
Downstream sequence
GTACTTGCATATGTTCAAGGTCTATAACTTTCTGTAACTGTCTTCTTGTAATTATTCAGTATCATAAAAGGAAAGGAAGAGAGAAAGACAGAGACTCATA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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