Basic Information
VIS ID
TVIS30002263
Fusion event
HIV-ASB2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr14
Cytoband
q32.12
Reference genome
GRCh37/hg19
Start
94423256/93956910 (Hg38)
End
94423256/93956910 (Hg38)
Orient
+
Location type
Exonic
Target gene
ASB2
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-mir-7-5p ; hsa-mir-218-5p
Nearest miRNA
hsa-mir-1260a/Upstream/8608; hsa-mir-1185-1/Downstream/1181009;
Nearest TSS
ENST00000550708/Upstream/1331; ENST00000449472/Downstream/139;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/17086, chr14-CpG: 77/Downstream/69383
Upstream sequence
ACCCCTTGGAACAAGCCCATTGGGGCCCGGGCCGGCGAACTCTCAGGAGGTGCAGTGGACCTGGAGGGTGCAGAGCAGGAGTGAAAGAGGGAAAAGTACT
Downstream sequence
CTGCATAGGAGAAGCGGGTCATGGCTTCAGGCAGGAATGAGGATGGAGGGAGAGCCAGGGAGAGACTGACTGACAGACACAGGGCTCTGAACCAAAGCAG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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