Basic Information
VIS ID
TVIS30002267
Fusion event
HIV-chr14 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr14
Cytoband
q32.2
Reference genome
GRCh37/hg19
Start
98032337/97566000 (Hg38)
End
98032337/97566000 (Hg38)
Orient
-
Location type
ncRNA_intronic
Nearest miRNA
hsa-mir-1260a/Upstream/2428014; hsa-mir-1185-1/Downstream/2543419;
Nearest TSS
ENST00000550708/Upstream/107130; ENST00000557072/Downstream/120627;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/346391, chr14-CpG: 53/Downstream/1552068
Upstream sequence
GGAAATTCCACAGTAACAAAGACAGAAAGCTACTCTCACTCTTTCTTTCTGCAGTTCAGGACCACTTTCTTTAGTTTGTGGCTGTTGATACAcagaacct
Downstream sequence
ggtatatgggagaggtccaattcatccttgttgaatgagtgaCTATAGGAATTTGTTATCGAGCCCTGAATGTGAGTTGGTGTTGGTGATAGGGAAAGTC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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