Basic Information
VIS ID
TVIS30002273
Fusion event
HIV-chr14 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr14
Cytoband
q32.2
Reference genome
GRCh37/hg19
Start
99441993/98975656 (Hg38)
End
99441993/98975656 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-1260a/Upstream/3837670; hsa-mir-1185-1/Downstream/1133763;
Nearest TSS
ENST00000550708/Upstream/47851; ENST00000423922/Downstream/182760;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/1756047, chr14-CpG: 53/Downstream/142412
Nearby gene
BCL11B(No orient, 193632)
Nearest cancer related gene
BCL11B(OG, No orient, 193632)
Upstream sequence
tagtcccagctactcaggaggctgaagcaggagaatggcgtgaacccggcagacagaggttgcagtgagctgagattgcaccactgcactccagcctggg
Downstream sequence
cgacagagcgagactctgtctcaaaaaaaaaaagaatattcaatccaaaagaaaggtagaaaagaagaaaaaaaaaacaaacaacagatgagaataataa
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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