Basic Information
VIS ID
TVIS30002274
Fusion event
HIV-chr14 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr14
Cytoband
q32.2
Reference genome
GRCh37/hg19
Start
99462984/98996647 (Hg38)
End
99462984/98996647 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-1260a/Upstream/3858661; hsa-mir-1185-1/Downstream/1112772;
Nearest TSS
ENST00000550708/Upstream/68842; ENST00000423922/Downstream/161769;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/1777038, chr14-CpG: 53/Downstream/121421
Nearby gene
BCL11B(No orient, 172641)
Nearest cancer related gene
BCL11B(OG, No orient, 172641)
Upstream sequence
acacccaggctgaggatctcagacctgctatgaatcaggggctgctaatgtcttccactcatctgttttcctaaaggaagtatttattgcaatgacctag
Downstream sequence
cctttgttctaccacctcatgttgggtgtatggggacaagtagcttgtcattgtggtgcataagtcactggctcatgagaagccacatttagaccagatg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate