VISDB Viral Integration Site DataBase

VIS ID

TVIS30002277

Fusion event

HIV-YY1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr14

Cytoband

q32.2

Reference genome

Start

End

100719384/100253047 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-34a-5p ; hsa-mir-31-5p ; hsa-mir-93-5p ; hsa-mir-769-3p ; hsa-mir-615-3p ; hsa-mir-484 ; hsa-mir-331-3p ; hsa-mir-221-3p ; hsa-mir-7-5p ; hsa-mir-205-5p ; hsa-mir-34b-3p ; hsa-mir-34c-5p ; hsa-mir-4279 ; hsa-mir-1976 ; hsa-mir-3653-5p ; hsa-mir-6727-3p ; hsa-mir-6747-3p ; hsa-mir-4722-3p ; hsa-mir-4532 ; hsa-mir-1247-3p ; hsa-mir-548aw ; hsa-mir-6790-5p ; hsa-mir-4658 ; hsa-mir-4758-5p ; hsa-mir-1238-5p ; hsa-mir-1468-3p ; hsa-mir-548x-5p ; hsa-mir-548g-5p ; hsa-mir-548f-5p ; hsa-mir-548aj-5p ; hsa-mir-1909-5p ; hsa-mir-1208 ; hsa-mir-6760-3p ; hsa-mir-4496 ; hsa-mir-651-3p ; hsa-mir-301b-3p ; hsa-mir-301a-3p ; hsa-mir-3666 ; hsa-mir-454-3p ; hsa-mir-4295 ; hsa-mir-130a-3p ; hsa-mir-130b-3p ; hsa-mir-19a-3p ; hsa-mir-19b-3p ; hsa-mir-5007-3p ; hsa-mir-27b-5p ; hsa-mir-1279 ; hsa-mir-5588-3p ; hsa-mir-8066 ; hsa-mir-183-5p ; hsa-mir-892b ; hsa-mir-193b-3p ; hsa-mir-193a-3p ; hsa-mir-491-3p ; hsa-mir-568 ; hsa-mir-4795-3p ; hsa-mir-466 ; hsa-mir-4672 ; hsa-mir-4729 ; hsa-mir-3941 ; hsa-mir-6504-3p ; hsa-mir-586 ; hsa-mir-3976 ; hsa-mir-4643 ; hsa-mir-4789-3p ; hsa-mir-543 ; hsa-mir-571 ; hsa-mir-219a-1-3p ; hsa-let-7c-3p ; hsa-mir-3177-5p ; hsa-mir-6793-3p ; hsa-mir-3613-3p ; hsa-mir-338-5p ; hsa-mir-548t-5p ; hsa-mir-548az-5p ; hsa-mir-374b-3p ; hsa-mir-5682 ; hsa-mir-585-5p ; hsa-mir-6507-5p ; hsa-mir-511-5p ; hsa-mir-3613-5p ; hsa-mir-6830-3p ; hsa-mir-3133 ; hsa-mir-5590-3p ; hsa-mir-340-5p ; hsa-mir-142-5p ; hsa-mir-186-5p ; hsa-mir-219a-2-3p ; hsa-mir-4522 ; hsa-mir-6870-3p ; hsa-mir-138-1-3p ; hsa-mir-3679-3p ; hsa-mir-6840-5p ; hsa-mir-2115-5p ; hsa-mir-3155b ; hsa-mir-3155a ; hsa-mir-548o-3p ; hsa-mir-5582-3p ; hsa-mir-1323 ; hsa-mir-1273h-5p ; hsa-mir-1299 ; hsa-mir-149-3p ; hsa-mir-204-3p ; hsa-mir-2467-5p ; hsa-mir-30b-3p ; hsa-mir-3192-5p ; hsa-mir-3689a-3p ; hsa-mir-3689b-3p ; hsa-mir-3689c ; hsa-mir-378a-3p ; hsa-mir-378b ; hsa-mir-378c ; hsa-mir-378d ; hsa-mir-378e ; hsa-mir-378f ; hsa-mir-378h ; hsa-mir-378i ; hsa-mir-422a ; hsa-mir-4314 ; hsa-mir-4638-3p ; hsa-mir-4646-5p ; hsa-mir-4728-5p ; hsa-mir-4778-5p ; hsa-mir-4782-5p ; hsa-mir-516b-5p ; hsa-mir-5706 ; hsa-mir-619-5p ; hsa-mir-630 ; hsa-mir-6506-5p ; hsa-mir-6779-5p ; hsa-mir-6780a-5p ; hsa-mir-6785-5p ; hsa-mir-6799-5p ; hsa-mir-6883-5p ; hsa-mir-7106-5p ; hsa-mir-455-3p ; hsa-mir-5689 ; hsa-mir-5696 ; hsa-mir-6516-5p ; hsa-mir-1281 ; hsa-mir-129-5p ; hsa-mir-1304-3p ; hsa-mir-139-3p ; hsa-mir-2276-3p ; hsa-mir-30c-1-3p ; hsa-mir-30c-2-3p ; hsa-mir-3122 ; hsa-mir-3913-5p ; hsa-mir-4294 ; hsa-mir-431-5p ; hsa-mir-4485-5p ; hsa-mir-450a-1-3p ; hsa-mir-6513-5p ; hsa-mir-6731-5p ; hsa-mir-6778-3p ; hsa-mir-6788-5p ; hsa-mir-6878-5p ; hsa-mir-6890-3p ; hsa-mir-8085 ; hsa-mir-887-5p ; hsa-mir-924

Nearest miRNA

hsa-mir-1260a/Upstream/143294; hsa-mir-1185-1/Downstream/24310;

Nearest TSS

Nearest CpG islands

None/Target, chr14-CpG: 35/Upstream/12317, chr14-CpG: 72/Downstream/32288

Nearest cancer related gene

YY1(OG, No orient, 0)

Upstream sequence

ctggaggatcacttgagctagggaggttgaggctgcattgagcagtgatagtgccactgcactccagcctggacaacagagtgagaccctgtctcaaagg

Downstream sequence

aaaagaaagaaagaaaCCCATAGAAACTTCTAATGGGGTTAACTATGTCCTGTGAAACAATAAAAGATCCTGTCCTCAAGGGAAACTCCAGCAGGGAATA