Basic Information
VIS ID
TVIS30002281
Fusion event
HIV-DYNC1H1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr14
Cytoband
q32.31
Reference genome
GRCh37/hg19
Start
102450655/101984318 (Hg38)
End
102450655/101984318 (Hg38)
Orient
+
Location type
Intronic
Target gene
DYNC1H1
miRNAs that regulate target gene
hsa-mir-122-5p ; hsa-mir-455-3p ; hsa-mir-615-3p ; hsa-mir-149-5p ; hsa-mir-221-3p ; hsa-mir-96-5p ; hsa-mir-92a-3p ; hsa-let-7b-5p ; hsa-mir-544a ; hsa-mir-382-5p ; hsa-mir-409-5p ; hsa-mir-485-5p
Nearest miRNA
hsa-mir-1185-1/Upstream/423896; hsa-mir-12121/Downstream/555326;
Nearest TSS
ENST00000550708/Upstream/19630; ENST00000643958/Downstream/16302;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/18757, chr14-CpG: 16/Downstream/31556
Upstream sequence
agctcaaatgatccgcccacctcagcctcccaaagtgctgggattataggcatgagccaccgcgccctgccCGTATGCATTGTTTTAATGTGTTTTTTGA
Downstream sequence
AAACTTAACTACTTCTTTCTGTTGTCTTTAAGATCTAGTGATTCTGTATtgtgtgtgtgtgtgtatatatatatgcgtatatatgtgtgtgtgtgtgtgt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate