Basic Information
VIS ID
TVIS30002282
Fusion event
HIV-WDR20 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr14
Cytoband
q32.31
Reference genome
GRCh37/hg19
Start
102628773/102162436 (Hg38)
End
102628773/102162436 (Hg38)
Orient
-
Location type
Intronic
Target gene
WDR20
miRNAs that regulate target gene
hsa-mir-19a-3p ; hsa-mir-19b-3p ; hsa-mir-4537 ; hsa-mir-5586-3p
Nearest miRNA
hsa-mir-1185-1/Upstream/602014; hsa-mir-12121/Downstream/377208;
Nearest TSS
ENST00000550708/Upstream/5177; ENST00000555973/Downstream/8945;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/21796, chr14-CpG: 16/Downstream/51514
Upstream sequence
TGAGCTGccaccttttcacacaatattggaattttttgtttgaatctctgtttaccctactggactgtgaatcttgagggaagaaaccatatcttattga
Downstream sequence
tcatatcaataagtgcctgtacgtagtaggcacATTATGTTCATTTTTAAGTTGAACAAAATTGGAACTAATTTGTTGAAATTATAGTCCTCCAACAAGG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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