Basic Information
VIS ID
TVIS30002285
Fusion event
HIV-KLC1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr14
Cytoband
q32.33
Reference genome
GRCh37/hg19
Start
104111236/103644899 (Hg38)
End
104111236/103644899 (Hg38)
Orient
+
Location type
Intronic
Target gene
KLC1
miRNAs that regulate target gene
hsa-mir-197-3p ; hsa-mir-34a-5p
Nearest miRNA
hsa-mir-1185-1/Upstream/1105173; hsa-mir-12121/Downstream/472506;
Nearest TSS
ENST00000550708/Upstream/15602; ENST00000553436/Downstream/28456;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/14764, chr14-CpG: 17/Downstream/53815
Upstream sequence
CAATTTTTTTGGGGGGTCAAGTTCTACCTTtagaacagtgccttgaataaagtagaggctcagtaaacatttgaggaatggatggatGTTACTCTTTTGG
Downstream sequence
GGCTGGCCAGATTTCTTTCTTTAgttctgttcttttctgttctattctgttcttttccttttcttttctttctctctctctttctttctttttctttgag
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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