Basic Information
VIS ID
TVIS30002291
Fusion event
HIV-IGH integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr14
Cytoband
q32.33
Reference genome
GRCh37/hg19
Start
106930201/106474199 (Hg38)
End
106930201/106474199 (Hg38)
Orient
+
Location type
Intronic
Target gene
IGH
Nearest miRNA
hsa-mir-1185-1/Upstream/614646; hsa-mir-5195/Downstream/376686;
Nearest TSS
ENST00000550708/Upstream/1199; ENST00000620337/Downstream/4194;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/13513, chr14-CpG: 34/Downstream/5968
Nearby gene
LINC00221(No orient, 8244)
Upstream sequence
gtatatgtccaagagaaaaccaatcattggaacaaaaagacacatcaactcacgtgtgtatcactgtgctattcacagtaccaaagacatataatgaaac
Downstream sequence
taaatgccgatcagttacagactgaaaaaagaaaacgtggtacttatacacagtggaataccatgcagctgtaaaaatgaatgaaatcatgtttttgcag
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate