Basic Information
VIS ID
TVIS30002293
Fusion event
HIV-APBA2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr15
Cytoband
q13.1
Reference genome
GRCh37/hg19
Start
29250112/28957909 (Hg38)
End
29250112/28957909 (Hg38)
Orient
-
Location type
Intronic
Target gene
APBA2
miRNAs that regulate target gene
hsa-mir-148b-3p ; hsa-mir-615-3p
Nearest miRNA
hsa-mir-1268a/Upstream/467064; hsa-mir-10393/Downstream/2107123;
Nearest TSS
ENST00000557528/Upstream/36272; ENST00000558206/Downstream/3395;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/70847, chr15-CpG: 62/Downstream/145529
Upstream sequence
CCTCCCCCATGCTACTTTGGTGGCTTCTGTGGGAGCACAATATGTCCAGGGTGCCATCCCCAAGGCAGAAGGGAGCACCATCTGGTTTGATGTGTGGCCT
Downstream sequence
GTACTTCACCAAGCCCACCACATTTGGCCTATGACTGTGTCCTGCTGCGACTGGGTTGAAGTCAGAGGAGCCGAGACAGGCGGGGGAGCATTTGGAGGAC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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