Basic Information
VIS ID
TVIS30002295
Fusion event
HIV-chr15 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr15
Cytoband
q14
Reference genome
GRCh37/hg19
Start
38422653/38130452 (Hg38)
End
38422653/38130452 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-1233-1/Upstream/1157551; hsa-mir-10393/Downstream/3561133;
Nearest TSS
ENST00000557528/Upstream/57493; ENST00000561205/Downstream/96413;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/57325, chr15-CpG: 96/Downstream/121623
Upstream sequence
tcgcacagatctggaaacacagagccagaactagagtccggatctccttgtcctactctttcgtctttctCACATGGGCTTGTAAAAGCAAATCGTTCTG
Downstream sequence
TAGATACACTCTTTTCGCCTCAGTTCCCTGGCTAGGTTTCCTTTAAAGCTTGCTTCTTCTTCGCCTGGTGTGACGTATAACGGGCATACAGATGAGCTGA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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