Basic Information
VIS ID
TVIS30002299
Fusion event
HIV-INO80 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr15
Cytoband
q15.1
Reference genome
GRCh37/hg19
Start
41337067/41044869 (Hg38)
End
41337067/41044869 (Hg38)
Orient
-
Location type
Intronic
Target gene
INO80
miRNAs that regulate target gene
hsa-mir-6836-3p ; hsa-mir-5001-3p ; hsa-mir-6722-5p ; hsa-mir-3194-3p ; hsa-mir-6829-3p ; hsa-mir-6791-3p ; hsa-mir-6778-3p ; hsa-mir-2276-3p ; hsa-mir-6787-3p ; hsa-mir-1304-3p ; hsa-mir-6736-3p ; hsa-mir-6890-3p ; hsa-mir-216a-5p ; hsa-mir-6796-3p ; hsa-mir-5698 ; hsa-mir-4279 ; hsa-mir-1206 ; hsa-mir-143-5p ; hsa-mir-4430 ; hsa-mir-3652 ; hsa-mir-122-5p ; hsa-mir-504-3p ; hsa-mir-3135b ; hsa-mir-6499-3p ; hsa-mir-1976 ; hsa-mir-3653-5p ; hsa-mir-6747-3p ; hsa-mir-6727-3p ; hsa-mir-4722-3p ; hsa-mir-4532 ; hsa-mir-1247-3p ; hsa-mir-5693 ; hsa-mir-19b-3p ; hsa-mir-19a-3p ; hsa-mir-148a-3p
Nearest miRNA
hsa-mir-1233-1/Upstream/4071968; hsa-mir-10393/Downstream/646716;
Nearest TSS
ENST00000557528/Upstream/17270; ENST00000561280/Downstream/24753;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/91063, chr15-CpG: 80/Downstream/70992
Upstream sequence
ATGCTGCACCGCCCACTCCTCTGGGAACTTTTTGGTTCTCTCAGGCCTTCATTTACTTTACTATTATTTTTACTTATTCAAGGAAAAGGAAAGAAGATAC
Downstream sequence
TAAGTAGGTAATTTATGCTCAAATAATTGCTTACCTTTAACAAAGGGCAGCTGCAAAGGTTTGGAAAGGAGAGTGGAAAATTAACCCCAAGAAGGAAATC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate