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TVIS30002309
Basic Information
VIS ID
TVIS30002309
Fusion event
HIV-TRPM7 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr15
Cytoband
q21.2
Reference genome
GRCh37/hg19
Start
50955159/50662962 (Hg38)
End
50955159/50662962 (Hg38)
Orient
+
Location type
Intronic
Target gene
TRPM7
miRNAs that regulate target gene
hsa-mir-9-5p
;
hsa-mir-21-5p
;
hsa-mir-10a-5p
;
hsa-mir-4433a-3p
;
hsa-mir-4459
;
hsa-mir-4768-3p
;
hsa-mir-6500-3p
;
hsa-mir-3614-5p
;
hsa-mir-383-5p
;
hsa-mir-3185
;
hsa-mir-196b-3p
;
hsa-mir-4499
;
hsa-mir-4494
;
hsa-mir-5580-3p
;
hsa-mir-129-5p
;
hsa-mir-8055
;
hsa-mir-6864-3p
;
hsa-mir-3672
;
hsa-mir-6828-3p
;
hsa-mir-6071
;
hsa-mir-6879-3p
;
hsa-mir-6876-3p
;
hsa-mir-626
;
hsa-mir-4524a-3p
;
hsa-mir-6773-3p
;
hsa-mir-3692-5p
;
hsa-mir-93-3p
;
hsa-mir-6874-3p
;
hsa-mir-148b-5p
;
hsa-mir-4797-5p
;
hsa-mir-6839-3p
;
hsa-mir-4507
;
hsa-mir-3940-5p
;
hsa-mir-23b-5p
;
hsa-mir-23a-5p
;
hsa-mir-4284
;
hsa-mir-6774-5p
;
hsa-mir-4772-3p
;
hsa-mir-635
;
hsa-mir-1304-3p
;
hsa-mir-645
;
hsa-mir-6890-3p
;
hsa-mir-665
;
hsa-mir-6771-5p
;
hsa-mir-7160-5p
;
hsa-mir-4722-5p
;
hsa-mir-6884-5p
;
hsa-mir-485-5p
;
hsa-mir-1827
;
hsa-mir-302a-5p
;
hsa-mir-6746-5p
;
hsa-mir-4649-3p
;
hsa-mir-4478
;
hsa-mir-4419b
;
hsa-mir-3929
;
hsa-mir-940
;
hsa-mir-6893-5p
;
hsa-mir-6808-5p
;
hsa-mir-34b-3p
;
hsa-mir-6771-3p
;
hsa-mir-4776-3p
;
hsa-mir-744-3p
;
hsa-mir-6848-3p
;
hsa-mir-6843-3p
;
hsa-mir-4659b-5p
;
hsa-mir-4659a-5p
;
hsa-mir-5590-5p
;
hsa-mir-4423-5p
;
hsa-mir-6501-5p
;
hsa-mir-1290
;
hsa-mir-6131
;
hsa-mir-3663-5p
;
hsa-mir-372-5p
;
hsa-mir-371a-5p
;
hsa-mir-4716-5p
;
hsa-mir-3159
Nearest miRNA
hsa-mir-10393/Upstream/302552; hsa-mir-11181/Downstream/579228;
Nearest TSS
ENST00000557528/Upstream/38746;
ENST00000558317/Downstream/23809;
Nearest CpG islands
None/Target,
chr15-CpG: 55/Upstream/238333
,
chr15-CpG: 84/Downstream/23184
Upstream sequence
GTACAAATAATTTATTTAGTGGTTTTTGTTTCCAATAAAGAAATAACAATATAATTTACACTAAAATTTCTAGAAGACCCCAGAAGTAACAAAGGTGTGC
Downstream sequence
TTACCTGTGAGGGTCCTTGGAACTTGGTATAATATATACACATTCCCTCTTGGTCAAAGTGCTTTCTATCCAGGATTTCTGGGACTAAAACAAAATGTTT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Sample Information
×
Sample name
Active CD4+
Sample type
Cell line
Gender
Female
CpG Island Information
×
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