VISDB Viral Integration Site DataBase

VIS ID

TVIS30002311

Fusion event

HIV-MYO5A integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr15

Cytoband

q21.2

Reference genome

Start

End

52618064/52325867 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-103a-3p ; hsa-mir-32-5p ; hsa-mir-16-5p ; hsa-mir-145-5p ; hsa-mir-193b-3p ; hsa-mir-484 ; hsa-mir-4524b-5p ; hsa-mir-4524a-5p ; hsa-mir-3934-3p ; hsa-mir-4645-3p ; hsa-mir-7852-3p ; hsa-mir-3668 ; hsa-mir-646 ; hsa-mir-144-3p ; hsa-mir-3662 ; hsa-mir-503-5p ; hsa-mir-6838-5p ; hsa-mir-497-5p ; hsa-mir-424-5p ; hsa-mir-15a-5p ; hsa-mir-15b-5p ; hsa-mir-195-5p ; hsa-mir-6848-3p ; hsa-mir-6843-3p ; hsa-mir-519e-5p ; hsa-mir-515-5p ; hsa-mir-6131 ; hsa-mir-3663-5p ; hsa-mir-5695 ; hsa-mir-519d-5p ; hsa-mir-649 ; hsa-mir-490-3p ; hsa-mir-6756-3p ; hsa-mir-6868-3p ; hsa-mir-6749-3p ; hsa-mir-6792-3p ; hsa-mir-4691-5p ; hsa-mir-3124-3p ; hsa-mir-4685-3p ; hsa-mir-3667-3p ; hsa-mir-4287 ; hsa-mir-6734-3p ; hsa-mir-5088-3p ; hsa-mir-6884-3p ; hsa-mir-1303 ; hsa-mir-642a-5p ; hsa-mir-1470 ; hsa-mir-4667-3p ; hsa-mir-141-5p ; hsa-mir-4733-5p ; hsa-mir-573 ; hsa-mir-3616-5p ; hsa-mir-4795-5p ; hsa-mir-8079 ; hsa-mir-1245a ; hsa-mir-5195-5p ; hsa-mir-500a-5p ; hsa-mir-92a-3p ; hsa-mir-92b-3p ; hsa-mir-223-5p ; hsa-mir-297 ; hsa-mir-3650 ; hsa-mir-4455 ; hsa-mir-511-3p ; hsa-mir-567 ; hsa-mir-574-5p ; hsa-mir-6747-5p ; hsa-mir-6752-5p ; hsa-mir-6842-5p ; hsa-mir-6867-5p ; hsa-mir-7110-5p

Nearest miRNA

hsa-mir-10393/Upstream/48667; hsa-mir-11181/Downstream/3047073;

Nearest TSS

Nearest CpG islands

None/Target, chr15-CpG: 55/Upstream/29892, chr15-CpG: 119/Downstream/202269

Upstream sequence

AATGAGATACTCTATATTACTTCAAAATAAAAGAACATTTGCTTCTTTGGaaattaaaaaaaaattaaaataGAATGCCAACTCTTTACCTAAGAGGTTA

Downstream sequence

CTAGATTGAGTTTGCCGAAGTAGTATTTTTTGCAATAAACAAGCTGTATTTGATCAAAATTAATAAATCCATGTTAGTTCCTACTCTATCCCATAGAGAA