Basic Information
VIS ID
TVIS30002313
Fusion event
HIV-LOC107983981 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr15
Cytoband
q21.3
Reference genome
GRCh37/hg19
Start
53226234/52934037 (Hg38)
End
53226234/52934037 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC107983981
Nearest miRNA
hsa-mir-10393/Upstream/656837; hsa-mir-11181/Downstream/2438903;
Nearest TSS
ENST00000557528/Upstream/129095; ENST00000559915/Downstream/182328;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/127758, chr15-CpG: 33/Downstream/825421
Nearby gene
ONECUT1(No orient, 144025)
Upstream sequence
aactgtaaaatagagataataatatcCCTGTGGTTAGTTTGATTATAgttaagcaaatattcactctcctccccaccttcccacactggagaagtaaatc
Downstream sequence
tttccaccctgttgatgttgggcttggccctataacttgctttggccTCATGGTGGGTGAGATGTCCTTCCCTGCTTGCACTTGAATCTTGGGCTTAGTT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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