Basic Information
VIS ID
TVIS30002317
Fusion event
HIV-SLTM integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr15
Cytoband
q22.1
Reference genome
GRCh37/hg19
Start
59180822/58888623 (Hg38)
End
59180822/58888623 (Hg38)
Orient
+
Location type
Intronic
Target gene
SLTM
miRNAs that regulate target gene
hsa-mir-186-5p
Nearest miRNA
hsa-mir-10393/Upstream/3515589; hsa-mir-11181/Downstream/282560;
Nearest TSS
ENST00000557528/Upstream/201; ENST00000452467/Downstream/106;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/23363, chr15-CpG: 121/Downstream/44450
Upstream sequence
TTTTATTCTCGCTCCAGTAAGGATCATCTCGCCTTGAAGAGAAATATTTGCTTATTTACATAAATTAGTTCTACAGTAATCAAACGACATTTACTTGGAG
Downstream sequence
TCATACATACCACATGTTAGAACTGTGGACATAACAGGGCTAGTAAACTCAAGACATAACACATCAGGAGTACAAACTAGCAAAGACTTAATTGTTGAAT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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