Basic Information
VIS ID
TVIS30002339
Fusion event
HIV-RAB11A integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr15
Cytoband
q22.31
Reference genome
GRCh37/hg19
Start
66183038/65890700 (Hg38)
End
66183038/65890700 (Hg38)
Orient
+
Location type
UTR3
Fragile sites / regions
FRA15A
Target gene
RAB11A
miRNAs that regulate target gene
hsa-mir-186-5p ; hsa-mir-92a-3p ; hsa-mir-320a
Nearest miRNA
hsa-mir-10393/Upstream/171368; hsa-mir-11181/Downstream/149533;
Nearest TSS
ENST00000557528/Upstream/20687; ENST00000532293/Downstream/19071;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/20445, chr15-CpG: 30/Downstream/91496
Nearest cancer related gene
RAB11A(OG, No orient, 0)
Upstream sequence
TGCCCATCAGAGCTGGTCACATTTCTTTGATCATTGAAAAAATGAATATCTTAATTTTTGTCTTTGCTGACTGGTATTTATAAAATACAAATGCTTTTAG
Downstream sequence
TGGGTTGAGCTGTTGTGATAATCTCTTCCATCTACCTTAGAGAAGAAGCTGTACTATTTAGACAGTTTTGGCCAACACTAGAAGCAAAAGAATTCAAAGG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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