VISDB Viral Integration Site DataBase

VIS ID

TVIS30002346

Fusion event

HIV-TLE3 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr15

Cytoband

q23

Reference genome

Start

End

70378754/70086415 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-10a-5p ; hsa-mir-296-3p ; hsa-mir-615-3p ; hsa-mir-505-3p ; hsa-mir-196b-5p ; hsa-mir-222-3p ; hsa-mir-34a-5p ; hsa-mir-93-5p ; hsa-mir-92a-3p ; hsa-mir-18a-5p ; hsa-mir-1260b ; hsa-mir-6858-5p ; hsa-mir-8085 ; hsa-mir-4689 ; hsa-mir-6731-5p ; hsa-mir-765 ; hsa-mir-4644 ; hsa-mir-4306 ; hsa-mir-185-5p ; hsa-mir-7160-5p ; hsa-mir-6133 ; hsa-mir-6129 ; hsa-mir-6130 ; hsa-mir-6127 ; hsa-mir-4510 ; hsa-mir-4419a ; hsa-mir-4784 ; hsa-mir-3150b-3p ; hsa-mir-6760-5p ; hsa-mir-4786-5p ; hsa-mir-4478 ; hsa-mir-4419b ; hsa-mir-3929 ; hsa-mir-6873-5p ; hsa-mir-6758-5p ; hsa-mir-6856-5p ; hsa-mir-6739-5p ; hsa-mir-767-5p ; hsa-mir-648 ; hsa-mir-1911-3p ; hsa-mir-595 ; hsa-mir-5583-5p ; hsa-mir-4311 ; hsa-mir-3129-3p ; hsa-mir-141-5p ; hsa-mir-3163 ; hsa-mir-548c-3p ; hsa-mir-744-5p

Nearest miRNA

hsa-mir-10393/Upstream/6947; hsa-mir-11181/Downstream/2500802;

Nearest TSS

Nearest CpG islands

None/Target, chr15-CpG: 55/Upstream/52331, chr15-CpG: 409/Downstream/9175

Upstream sequence

ATGCCCCTGCCAGTATTATCAGAATTAATCAGTTTCAGATCCAAACTCAGCAAAGACCTGTCGAGGGCTAGCCCAAGGGAAAGATTTGGGAAGTGGGTGA

Downstream sequence

AAGGCCGCCTCCTCCAACCTTTTGGTCATATAGCTGGCAGGGTGGTGGAGTCTAAACCTCAAGTCTTCATGGCTGACCAGGAAGGGAGAGCCCTCTCCTG