Basic Information
VIS ID
TVIS30002348
Fusion event
HIV-MYO9A integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr15
Cytoband
q23
Reference genome
GRCh37/hg19
Start
72142517/71850176 (Hg38)
End
72142517/71850176 (Hg38)
Orient
-
Location type
Intronic
Target gene
MYO9A
miRNAs that regulate target gene
hsa-mir-128-3p ; hsa-mir-101-3p ; hsa-mir-27a-3p ; hsa-mir-21-5p ; hsa-mir-615-3p ; hsa-let-7c-5p ; hsa-let-7a-5p
Nearest miRNA
hsa-mir-10393/Upstream/1770708; hsa-mir-11181/Downstream/737041;
Nearest TSS
ENST00000557528/Upstream/31686; ENST00000568391/Downstream/2011;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/38098, chr15-CpG: 112/Downstream/267345
Upstream sequence
AGTGGTGTCAGGGCAGCGGAGAATGCAGGGCGCAAACACAATGGCCAAAGCATTAGCAGACATTCGATTAGTGTCTTCCTGCAGAGCAATCCTAAGAATT
Downstream sequence
AAAACAAAACAAAAAACAAATGAGTAAGGGATAAAAAGGGAGCACCATAGGGAAATAGGCAGAAGAGATGAGCAAAAGAAGACAGTATGACATGAACTGC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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