Basic Information
VIS ID
TVIS30002355
Fusion event
HIV-BBS4 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr15
Cytoband
q24.1
Reference genome
GRCh37/hg19
Start
73008998/72716657 (Hg38)
End
73008998/72716657 (Hg38)
Orient
-
Location type
Intronic
Target gene
BBS4
miRNAs that regulate target gene
hsa-mir-376c-3p ; hsa-mir-377-3p ; hsa-mir-127-5p ; hsa-mir-432-5p ; hsa-mir-382-5p
Nearest miRNA
hsa-mir-10393/Upstream/129344; hsa-mir-11181/Downstream/583253;
Nearest TSS
ENST00000557528/Upstream/29907; ENST00000569001/Downstream/171;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/30240, chr15-CpG: 108/Downstream/66588
Upstream sequence
TGAGACCAAGGCCTTGGAACAGCTGCCAGTGCAATCCCTACTAAGAGAGCTTCTGCTGTTAGTGTATAGCAGCTTCACTGACCAAACCAGCACAACCACC
Downstream sequence
TCATAGAGAAAAGGCTTCTAGAATTCTCTGCTGGATGAAATATGATTAAAATGTGGGACTAGTAGGGTTAGTCTTCTAAGAATTTTGAGGTAATAATTAT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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