Basic Information
VIS ID
TVIS30002360
Fusion event
HIV-MPI integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr15
Cytoband
q24.1
Reference genome
GRCh37/hg19
Start
75190977/74898636 (Hg38)
End
75190977/74898636 (Hg38)
Orient
-
Location type
UTR3
Target gene
MPI
miRNAs that regulate target gene
hsa-mir-26b-5p ; hsa-mir-877-3p ; hsa-mir-877-5p ; hsa-mir-324-5p ; hsa-mir-320a ; hsa-mir-128-3p ; hsa-mir-216a-3p ; hsa-mir-221-5p ; hsa-mir-3681-3p ; hsa-mir-4786-5p ; hsa-mir-4793-5p ; hsa-mir-4794 ; hsa-mir-6502-3p ; hsa-mir-664a-5p ; hsa-mir-6771-3p ; hsa-mir-6801-5p ; hsa-mir-8073
Nearest miRNA
hsa-mir-10393/Upstream/57929; hsa-mir-11181/Downstream/454975;
Nearest TSS
ENST00000557528/Upstream/3202; ENST00000564692/Downstream/1356;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/8355, chr15-CpG: 89/Downstream/7662
Upstream sequence
ttctcttttttttttttttgagacggagtctcggtctgtagcccaggctggagtgcagtggcacgatctcggctcattgcaagctccgcctcccgggttc
Downstream sequence
acgccactcttctgcctcagcctcccaagtagctgggaccacaggcgcccaccaccacgcccagccaatttttttggtatttttagtagagatggggttt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate