Basic Information
VIS ID
TVIS30002361
Fusion event
HIV-COX5A integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr15
Cytoband
q24.2
Reference genome
GRCh37/hg19
Start
75214496/74922155 (Hg38)
End
75214496/74922155 (Hg38)
Orient
+
Location type
Intronic
Target gene
COX5A
miRNAs that regulate target gene
hsa-mir-484 ; hsa-mir-324-5p ; hsa-mir-100-5p ; hsa-mir-20a-5p ; hsa-mir-26b-5p ; hsa-mir-26a-5p
Nearest miRNA
hsa-mir-10393/Upstream/81448; hsa-mir-11181/Downstream/431456;
Nearest TSS
ENST00000557528/Upstream/15034; ENST00000568119/Downstream/15621;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/15002, chr15-CpG: 91/Downstream/15286
Upstream sequence
AACAAACAAAAAGACCACTCCGTTAAAGCAAGCTTTAAAACGAGATCCCACctgggcgtggtggctcatgcctgtaatcccagcactttgggaggctgag
Downstream sequence
gcgggtggatcacctgaaatcaggagttcaagaccagcctggccaacatggtgaaaccgtctctactaaaaatacaaaaattagccgggcatggtggtgc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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