VISDB Viral Integration Site DataBase

VIS ID

TVIS30002366

Fusion event

HIV-PEAK1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr15

Cytoband

q24.3

Reference genome

Start

End

77539468/77247126 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-183-5p ; hsa-mir-3941 ; hsa-mir-8485 ; hsa-mir-20a-5p ; hsa-mir-106b-5p ; hsa-mir-3190-3p ; hsa-mir-3202 ; hsa-mir-4533 ; hsa-mir-1252-5p ; hsa-mir-223-5p ; hsa-mir-603 ; hsa-mir-362-3p ; hsa-mir-329-3p ; hsa-mir-574-3p ; hsa-mir-769-3p ; hsa-mir-450b-3p ; hsa-mir-638 ; hsa-mir-4713-3p ; hsa-mir-627-3p ; hsa-mir-6845-3p ; hsa-mir-2392 ; hsa-mir-32-5p ; hsa-mir-92b-3p ; hsa-mir-92a-3p ; hsa-mir-93-5p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-17-5p ; hsa-mir-1251-5p ; hsa-mir-1273h-5p ; hsa-mir-149-3p ; hsa-mir-1827 ; hsa-mir-2682-5p ; hsa-mir-30b-3p ; hsa-mir-3192-5p ; hsa-mir-34b-5p ; hsa-mir-3612 ; hsa-mir-3689a-3p ; hsa-mir-3689b-3p ; hsa-mir-3689c ; hsa-mir-449c-5p ; hsa-mir-4728-5p ; hsa-mir-517-5p ; hsa-mir-5197-3p ; hsa-mir-6508-5p ; hsa-mir-650 ; hsa-mir-6779-5p ; hsa-mir-6780a-5p ; hsa-mir-6785-5p ; hsa-mir-6799-5p ; hsa-mir-6817-3p ; hsa-mir-6873-3p ; hsa-mir-6883-5p ; hsa-mir-6895-3p ; hsa-mir-7106-5p ; hsa-mir-7110-3p ; hsa-mir-8067 ; hsa-mir-511-3p

Nearest miRNA

hsa-mir-10393/Upstream/1484811; hsa-mir-11181/Downstream/1962662;

Nearest TSS

Nearest CpG islands

None/Target, chr15-CpG: 55/Upstream/175908, chr15-CpG: 100/Downstream/172157

Upstream sequence

tagtgtatagaaatatgatagatttttatataattattttgaatcctgtgactttactaattcaccacttatcattagttctagtacactttttggtaga

Downstream sequence

ttctctgggattttgtgcatagaaaatgatttcatttgcaaatactgagagcttacttcttcctcttcaatctgcattcctttgatttctttcatttttc