VISDB Viral Integration Site DataBase

VIS ID

TVIS30002368

Fusion event

HIV-IREB2 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr15

Cytoband

q25.1

Reference genome

Start

End

78762838/78470496 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-9-5p ; hsa-mir-21-5p ; hsa-mir-615-3p ; hsa-mir-520g-5p ; hsa-mir-570-5p ; hsa-mir-1827 ; hsa-mir-1910-3p ; hsa-mir-548ag ; hsa-mir-548ai ; hsa-mir-5580-3p ; hsa-mir-6511a-5p ; hsa-mir-6866-5p ; hsa-mir-548ba ; hsa-mir-7847-3p ; hsa-mir-30a-5p ; hsa-mir-30c-5p ; hsa-mir-30d-5p ; hsa-mir-30b-5p ; hsa-mir-30e-5p ; hsa-mir-6516-5p ; hsa-mir-7702 ; hsa-mir-455-3p ; hsa-mir-623 ; hsa-mir-151a-3p ; hsa-mir-4521 ; hsa-mir-6841-3p ; hsa-mir-6780b-3p ; hsa-mir-4780 ; hsa-mir-6866-3p ; hsa-mir-188-5p ; hsa-mir-541-5p ; hsa-mir-6069 ; hsa-mir-1179 ; hsa-mir-4752 ; hsa-mir-6833-5p ; hsa-mir-4443 ; hsa-mir-7977 ; hsa-mir-650 ; hsa-mir-3612 ; hsa-mir-383-3p ; hsa-mir-6500-3p ; hsa-mir-342-3p ; hsa-mir-1228-3p ; hsa-mir-4775 ; hsa-mir-590-3p ; hsa-mir-4684-5p ; hsa-mir-1283 ; hsa-mir-3675-3p ; hsa-mir-6771-3p ; hsa-mir-5582-3p ; hsa-mir-665 ; hsa-mir-7160-5p ; hsa-mir-4722-5p ; hsa-mir-4649-3p ; hsa-mir-345-3p ; hsa-mir-331-3p ; hsa-mir-6810-3p ; hsa-mir-6801-3p ; hsa-mir-4768-3p ; hsa-mir-4478 ; hsa-mir-4419b ; hsa-mir-3929 ; hsa-mir-940 ; hsa-mir-6893-5p ; hsa-mir-6808-5p ; hsa-mir-1247-3p ; hsa-mir-1292-3p ; hsa-mir-25-5p ; hsa-mir-377-5p ; hsa-mir-4459 ; hsa-mir-6086 ; hsa-mir-6087 ; hsa-mir-6499-3p ; hsa-mir-658 ; hsa-mir-6807-5p ; hsa-mir-129-5p

Nearest miRNA

hsa-mir-10393/Upstream/2708181; hsa-mir-11181/Downstream/739292;

Nearest TSS

Nearest CpG islands

None/Target, chr15-CpG: 55/Upstream/31733, chr15-CpG: 64/Downstream/36708

Upstream sequence

CCTAGTAAATAGTTCTTCCAAGGATTTTAAGAATATATTTGTGTATATATATGCCTAAGAACGATGACTTAGAAAGAAACAAGGCAAGTCTTTTTTGTAA

Downstream sequence

TACATACGTTTAATGCCAGCTCTTCTTCCTTTTAGACCTGAAACAGTGTTAAAAAATCAAGAAGTAGAATTCGGCAGAAATCGAGAGAGGCTTCAGTTTT