Basic Information
VIS ID
TVIS30002369
Fusion event
HIV-UBE2Q2P1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr15
Cytoband
q25.2
Reference genome
GRCh37/hg19
Start
85094978/84551747 (Hg38)
End
85094978/84551747 (Hg38)
Orient
+
Location type
ncRNA_intronic
Target gene
UBE2Q2P1
Nearest miRNA
hsa-mir-10393/Upstream/1484332; hsa-mir-11181/Downstream/828849;
Nearest TSS
ENST00000557528/Upstream/51369; ENST00000502939/Downstream/49239;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/50717, chr15-CpG: 89/Downstream/18457
Upstream sequence
GTAGTTCCAGCCATCATTTATGATTGCACCGGGAGATAAGATAGAGGGGTAGAGGATGACAATTAGGAATCAGCATATGTTCCCCCCTAAAAGCTATCAG
Downstream sequence
TTGCCAAGTCTTGGCCATGAAGAACTCCCAATCAAttttttatttttaatttttatttaatttaatttatttatttatttatttatttatttatttattt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate