Basic Information
VIS ID
TVIS30002371
Fusion event
HIV-PDE8A integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr15
Cytoband
q25.3
Reference genome
GRCh37/hg19
Start
85625101/85081870 (Hg38)
End
85625101/85081870 (Hg38)
Orient
-
Location type
Intronic
Target gene
PDE8A
miRNAs that regulate target gene
hsa-mir-183-5p ; hsa-mir-33a-5p
Nearest miRNA
hsa-mir-10393/Upstream/2014455; hsa-mir-11181/Downstream/298726;
Nearest TSS
ENST00000557528/Upstream/14842; ENST00000561105/Downstream/15933;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/99236, chr15-CpG: 115/Downstream/152023
Upstream sequence
GGGGGCAAACAGGAGCAAGATGCTGTACATTTGGTCACATGCTAGTTTTTTTTACCTTGATTTCTGCCTTTGGGGTAAAAAAGTTTGGTGGATACATAAC
Downstream sequence
ATTCAGACCAATTAAAAAGTCTGATTGCATGCATGGGAATCCATTTGTGGAAATGGATAAATACACATTCCCTCCACAGCCCTCACATCCCCTCCACAGC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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