Basic Information
VIS ID
TVIS30002376
Fusion event
HIV-ISG20 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr15
Cytoband
q26.1
Reference genome
GRCh37/hg19
Start
89181305/88638074 (Hg38)
End
89181305/88638074 (Hg38)
Orient
-
Location type
Intronic
Target gene
ISG20
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-mir-1-3p
Nearest miRNA
hsa-mir-10393/Upstream/26140; hsa-mir-1302-10/Downstream/688665;
Nearest TSS
ENST00000557528/Upstream/1904; ENST00000379224/Downstream/669;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/16353, chr15-CpG: 28/Downstream/103707
Upstream sequence
AGCAGGAGCAGGGCTTTCTCATGAAGACGTATTTCAGTCTTTGGTTTTATTTTTGAGGTTTGTTAAAGTTGGGCATCCAAATCCCACTTGGTGAAAATAC
Downstream sequence
TACAGACCTGGGGAAGTTACTTTTCAAACCACAGATCTTCATGACACTGGGAGGCAGTCAGATTGGAGGGATCAGTGTGGATTCTGCACAGATCTGGGGT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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