Basic Information
VIS ID
TVIS30002387
Fusion event
HIV-chr15 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr15
Cytoband
q26.1
Reference genome
GRCh37/hg19
Start
93442651/92899421 (Hg38)
End
93442651/92899421 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-10393/Upstream/2892580; hsa-mir-1302-10/Downstream/4978;
Nearest TSS
ENST00000557528/Upstream/13218; ENST00000627622/Downstream/768;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/15900, chr15-CpG: 37/Downstream/4852
Nearby gene
LINC01578(No orient, 674)
Upstream sequence
GATCTCATGGTTTTGATATTTAGGAGAATTTGCTTTGTGACATTACTTTGATAATTTGCAATCACGTATGTCCTATTGTTAATAACATTGTTGAAATGGG
Downstream sequence
TGTATACTTACTTGATTTGAAATATAAGGGAAGTGTTGGGATATGTGTTTTCTGTTGGATTTGGACGTGGAGTTTCTTGGGTTACTGATTTAAAGGTGAT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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