VISDB Viral Integration Site DataBase

VIS ID

TVIS30002395

Fusion event

HIV-CRAMP1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr16

Cytoband

p13.3

Reference genome

Start

End

1678759/1628758 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-877-3p ; hsa-mir-193b-3p ; hsa-mir-186-5p ; hsa-mir-96-5p ; hsa-mir-1271-5p ; hsa-mir-182-5p ; hsa-mir-4642 ; hsa-mir-6780a-3p ; hsa-mir-4775 ; hsa-mir-6504-5p ; hsa-mir-3064-5p ; hsa-mir-149-5p ; hsa-mir-664a-5p ; hsa-mir-4794 ; hsa-mir-5196-3p ; hsa-mir-3529-3p ; hsa-mir-590-3p ; hsa-mir-526b-5p ; hsa-mir-664b-3p ; hsa-mir-579-3p ; hsa-mir-5093 ; hsa-mir-548x-5p ; hsa-mir-548g-5p ; hsa-mir-548f-5p ; hsa-mir-548aj-5p ; hsa-mir-570-3p ; hsa-mir-454-5p ; hsa-mir-3675-3p ; hsa-mir-942-3p ; hsa-mir-651-3p ; hsa-mir-3646 ; hsa-mir-937-5p ; hsa-mir-6848-3p ; hsa-mir-6843-3p ; hsa-mir-323a-5p ; hsa-mir-4483 ; hsa-mir-1293 ; hsa-mir-1-5p ; hsa-mir-6823-5p ; hsa-mir-6881-3p ; hsa-mir-7111-3p ; hsa-mir-5195-3p ; hsa-mir-145-5p ; hsa-mir-6715b-3p ; hsa-mir-4326 ; hsa-mir-372-5p ; hsa-mir-371a-5p ; hsa-mir-616-5p ; hsa-mir-373-5p ; hsa-mir-371b-5p ; hsa-mir-3690 ; hsa-mir-6769b-3p ; hsa-mir-4723-3p ; hsa-mir-3183 ; hsa-mir-6756-3p ; hsa-mir-3127-3p ; hsa-mir-584-3p ; hsa-mir-6715a-3p ; hsa-mir-619-3p ; hsa-mir-490-3p

Nearest miRNA

hsa-mir-3176/Upstream/858481; hsa-mir-11401/Downstream/106227;

Nearest TSS

Nearest CpG islands

None/Target, chr16-CpG: 29/Upstream/2462, chr16-CpG: 28/Downstream/27107

Upstream sequence

CTCAAGCTGTGGGGTGACGGTGACTGGGCACAGGCCTCTGCTCTGAGAAGTGCGGCTTCTGCCATGTTGTCATGGCCACCGCTGCCTTTTTGATGCCTCC

Downstream sequence

CTGGGAGGGGTGCAGCAAGGCTGGCTGGGGCCTGATTGGATGCAGGGACCCCACCGCCATCACTGGGCCTCAGTTGGTCACTCCTGATCATGGGCTGAAT