VISDB Viral Integration Site DataBase

VIS ID

TVIS30002398

Fusion event

HIV-CCNF integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr16

Cytoband

p13.3

Reference genome

Start

End

2481477/2431476 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-503-5p ; hsa-mir-424-5p ; hsa-let-7b-5p ; hsa-mir-98-5p ; hsa-mir-423-5p ; hsa-mir-615-3p ; hsa-mir-324-3p ; hsa-let-7c-5p ; hsa-mir-762 ; hsa-mir-4492 ; hsa-mir-4498 ; hsa-mir-5001-5p ; hsa-mir-30a-5p ; hsa-mir-30c-5p ; hsa-mir-30d-5p ; hsa-mir-30b-5p ; hsa-mir-30e-5p ; hsa-mir-432-3p ; hsa-mir-3681-5p ; hsa-mir-3691-5p ; hsa-mir-4795-5p ; hsa-mir-6849-5p ; hsa-mir-218-5p ; hsa-mir-4459 ; hsa-mir-4497 ; hsa-mir-582-5p ; hsa-mir-101-3p ; hsa-mir-3713 ; hsa-mir-25-5p ; hsa-mir-658 ; hsa-mir-571 ; hsa-mir-219a-1-3p ; hsa-mir-655-5p ; hsa-mir-6087 ; hsa-mir-4693-3p ; hsa-mir-3174 ; hsa-mir-5694 ; hsa-mir-8073 ; hsa-mir-6516-5p ; hsa-mir-3678-3p ; hsa-mir-1273h-3p ; hsa-mir-885-3p ; hsa-mir-1193 ; hsa-mir-2467-3p ; hsa-mir-3620-5p ; hsa-mir-1587 ; hsa-mir-2355-5p ; hsa-mir-4417 ; hsa-mir-4741 ; hsa-mir-4675 ; hsa-mir-6829-5p ; hsa-mir-4656 ; hsa-mir-6762-3p ; hsa-mir-6853-5p ; hsa-mir-484 ; hsa-mir-3155b ; hsa-mir-3155a ; hsa-mir-4692 ; hsa-mir-4514 ; hsa-mir-6893-5p ; hsa-mir-940 ; hsa-mir-6808-5p ; hsa-mir-4668-5p ; hsa-mir-4665-5p ; hsa-mir-1275 ; hsa-mir-5010-5p ; hsa-mir-4525 ; hsa-mir-7111-5p ; hsa-mir-6870-5p ; hsa-mir-5698 ; hsa-mir-4723-5p ; hsa-mir-625-5p ; hsa-mir-7155-5p ; hsa-mir-637 ; hsa-mir-8089 ; hsa-mir-4700-5p ; hsa-mir-4667-5p ; hsa-mir-3613-3p ; hsa-mir-1298-3p ; hsa-mir-4422 ; hsa-mir-548e-5p ; hsa-mir-519d-5p ; hsa-mir-6513-5p ; hsa-mir-887-5p ; hsa-mir-3913-5p ; hsa-mir-3122 ; hsa-mir-450a-1-3p ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-6788-5p ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-7977 ; hsa-mir-8085 ; hsa-mir-6731-5p ; hsa-mir-6878-5p ; hsa-mir-383-3p

Nearest miRNA

hsa-mir-1225/Upstream/156785; hsa-mir-11401/Downstream/13916;

Nearest TSS

Nearest CpG islands

None/Target, chr16-CpG: 29/Upstream/1509, chr16-CpG: 76/Downstream/28339

Upstream sequence

AAAAAAGAGGTTGGGGCAGAggccaggcacggtggctcatgccttaatcctagcactttgggaggccgaaggggggtggatcacctgaggtcaggagttc

Downstream sequence

cagaccagcctggccaacttggcaaaacccccatctctactaaaaatacaaaaattagccgggcgtggtgtctcacgcctgtaatcccagctactaggga